Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Cxcl12P40224 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.39
Cxcl12P40224 2610301B20Rik-202ENSMUST00000101504 2053 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Cxcl12P40224 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.39
Cxcl12P40224 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Cxcl12P40224 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.58□□□□□ -0.4
Cxcl12P40224 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Cxcl12P40224 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC12.58□□□□□ -0.4
Cxcl12P40224 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Gm22711-201ENSMUST00000116890 133 ntBASIC12.58□□□□□ -0.4
Cxcl12P40224 Tbata-203ENSMUST00000121297 1000 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Gm17798-201ENSMUST00000182282 1035 ntBASIC12.58□□□□□ -0.4
Cxcl12P40224 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC12.58□□□□□ -0.4
Cxcl12P40224 4930413E15Rik-201ENSMUST00000202500 1290 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Gm3017-201ENSMUST00000203603 1126 ntBASIC12.58□□□□□ -0.4
Cxcl12P40224 4930423D24Rik-202ENSMUST00000219785 554 ntTSL 5 BASIC12.58□□□□□ -0.4
Cxcl12P40224 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.58□□□□□ -0.4
Cxcl12P40224 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Cxcl12P40224 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Cxcl12P40224 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm5380-201ENSMUST00000119296 2136 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm12164-201ENSMUST00000121695 551 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm8451-201ENSMUST00000170338 447 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 AC168279.1-201ENSMUST00000214611 382 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 1700001K19Rik-201ENSMUST00000070659 955 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm8894-201ENSMUST00000074642 666 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm7536-201ENSMUST00000077389 444 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm5453-201ENSMUST00000080866 447 ntBASIC12.57□□□□□ -0.4
Cxcl12P40224 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Zfp90-203ENSMUST00000212606 2685 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
Cxcl12P40224 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
Cxcl12P40224 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.56□□□□□ -0.4
Cxcl12P40224 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 Arhgap35-202ENSMUST00000171937 6251 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Cxcl12P40224 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Cxcl12P40224 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 55.9 ms