Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC14.23□□□□□ -0.13
Traf1P39428 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Sertad2-203ENSMUST00000109586 5515 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Gm7049-201ENSMUST00000223520 1712 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Traf1P39428 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC14.23□□□□□ -0.13
Traf1P39428 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.22□□□□□ -0.13
Traf1P39428 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Gm12217-201ENSMUST00000118858 696 ntBASIC14.22□□□□□ -0.13
Traf1P39428 Gm14208-201ENSMUST00000119645 678 ntBASIC14.22□□□□□ -0.13
Traf1P39428 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC14.22□□□□□ -0.13
Traf1P39428 AY036118-201ENSMUST00000200021 923 ntBASIC14.22□□□□□ -0.13
Traf1P39428 Gm45224-201ENSMUST00000208203 414 ntBASIC14.22□□□□□ -0.13
Traf1P39428 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC14.22□□□□□ -0.13
Traf1P39428 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Traf1P39428 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Traf1P39428 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Traf1P39428 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Gm6210-201ENSMUST00000204734 1942 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Traf1P39428 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC14.21□□□□□ -0.13
Traf1P39428 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Gm43289-201ENSMUST00000200537 1475 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Traf1P39428 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.21□□□□□ -0.13
Traf1P39428 Gm14760-201ENSMUST00000121831 999 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC14.21□□□□□ -0.13
Traf1P39428 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
Traf1P39428 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.21□□□□□ -0.13
Traf1P39428 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Gm28450-201ENSMUST00000187349 638 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Gm19994-201ENSMUST00000217086 586 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Traf1P39428 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Traf1P39428 Adra1a-206ENSMUST00000225182 2337 ntBASIC14.21□□□□□ -0.13
Traf1P39428 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms