Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm25649-201ENSMUST00000178476 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm25548-201ENSMUST00000178681 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm23147-201ENSMUST00000178841 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm26095-201ENSMUST00000179270 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22171-201ENSMUST00000179283 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm23936-201ENSMUST00000179354 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm22619-201ENSMUST00000179516 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm25255-201ENSMUST00000179579 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24755-201ENSMUST00000179691 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm26506-201ENSMUST00000179692 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm25086-201ENSMUST00000179931 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm23243-201ENSMUST00000180047 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24659-201ENSMUST00000180212 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm24169-201ENSMUST00000180244 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm23689-201ENSMUST00000180354 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Mir6990-201ENSMUST00000183724 91 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm27622-201ENSMUST00000183779 60 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm27359-201ENSMUST00000184153 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm27785-201ENSMUST00000184268 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm27466-201ENSMUST00000184396 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm27703-201ENSMUST00000184836 110 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm43094-201ENSMUST00000196549 921 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm43703-201ENSMUST00000200523 763 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC10.01□□□□□ -0.81
Sdc1P18828 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Gm10339-203ENSMUST00000225409 1671 ntBASIC10.01□□□□□ -0.81
Sdc1P18828 2700068H02Rik-201ENSMUST00000137882 1872 ntTSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Enam-201ENSMUST00000031222 5483 ntAPPRIS P2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Ablim2-206ENSMUST00000114206 3528 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Mcm2-201ENSMUST00000058011 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.81
Sdc1P18828 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC10.01□□□□□ -0.81
Sdc1P18828 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Kcnh7-203ENSMUST00000112454 3073 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Sgpp2-201ENSMUST00000036172 4002 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC10□□□□□ -0.81
Sdc1P18828 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Gm5303-201ENSMUST00000117943 1252 ntBASIC10□□□□□ -0.81
Sdc1P18828 Gm15376-201ENSMUST00000122258 783 ntBASIC10□□□□□ -0.81
Sdc1P18828 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC10□□□□□ -0.81
Sdc1P18828 Arfgap1-213ENSMUST00000184394 1209 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Gm4034-201ENSMUST00000187674 480 ntBASIC10□□□□□ -0.81
Sdc1P18828 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Gm45683-201ENSMUST00000210825 1247 ntBASIC10□□□□□ -0.81
Sdc1P18828 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC10□□□□□ -0.81
Sdc1P18828 Tssk3-201ENSMUST00000000421 1280 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Zfp384-206ENSMUST00000112425 2691 ntTSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Gm37969-201ENSMUST00000195777 3409 ntBASIC10□□□□□ -0.81
Sdc1P18828 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC10□□□□□ -0.81
Sdc1P18828 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Hsd3b6-201ENSMUST00000029463 1802 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC10□□□□□ -0.81
Sdc1P18828 4632415L05Rik-202ENSMUST00000198527 4087 ntBASIC10□□□□□ -0.81
Sdc1P18828 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC10□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 37.3 ms