Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Cog3-203ENSMUST00000227473 4197 ntBASIC11.98□□□□□ -0.49
Msh4Q99MT2 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gm7584-201ENSMUST00000175829 940 ntBASIC11.98□□□□□ -0.49
Msh4Q99MT2 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gm45022-201ENSMUST00000208332 545 ntTSL 5 BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Msh4Q99MT2 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Slc25a24-201ENSMUST00000029477 3431 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm7789-202ENSMUST00000211273 1400 ntBASIC11.97□□□□□ -0.49
Msh4Q99MT2 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm13350-201ENSMUST00000120519 479 ntBASIC11.97□□□□□ -0.49
Msh4Q99MT2 Mogat1-201ENSMUST00000012331 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm7895-201ENSMUST00000187459 1173 ntBASIC11.97□□□□□ -0.49
Msh4Q99MT2 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm39318-201ENSMUST00000214606 1118 ntTSL 3 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 AC165260.3-202ENSMUST00000224550 1031 ntBASIC11.97□□□□□ -0.49
Msh4Q99MT2 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.97□□□□□ -0.49
Msh4Q99MT2 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Msh4Q99MT2 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Adprhl1-205ENSMUST00000204916 5228 ntTSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Arhgap27-204ENSMUST00000107024 3976 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Lipe-208ENSMUST00000206861 3171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC11.96□□□□□ -0.49
Msh4Q99MT2 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Gm16296-201ENSMUST00000159905 325 ntBASIC11.96□□□□□ -0.49
Msh4Q99MT2 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Msh4Q99MT2 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Msh4Q99MT2 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Msh4Q99MT2 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 76 ms