Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ubfd1Q78JW9 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 AC123619.2-202ENSMUST00000225097 1568 ntBASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Gm23949-201ENSMUST00000104027 127 ntBASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Rprl1-201ENSMUST00000158050 327 ntBASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Mir5120-201ENSMUST00000175020 78 ntBASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Gm43138-201ENSMUST00000199123 708 ntBASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 AC164573.1-201ENSMUST00000218616 963 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ubfd1Q78JW9 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm9333-201ENSMUST00000205452 1323 ntBASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm12380-201ENSMUST00000119012 544 ntBASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 CT571245.2-201ENSMUST00000218421 305 ntBASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Atg2b-201ENSMUST00000041055 7546 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Ubfd1Q78JW9 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm43289-201ENSMUST00000200537 1475 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm27194-201ENSMUST00000175753 2936 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Gm23200-201ENSMUST00000104379 132 ntBASIC11.96□□□□□ -0.49
Ubfd1Q78JW9 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 64.8 ms