Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Ice2-202ENSMUST00000117246 1201 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Gm15976-201ENSMUST00000129701 429 ntTSL 3 BASIC12.54□□□□□ -0.4
Sox1P53783 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Gm22846-201ENSMUST00000157706 270 ntBASIC12.54□□□□□ -0.4
Sox1P53783 Gm38228-201ENSMUST00000193169 1293 ntBASIC12.54□□□□□ -0.4
Sox1P53783 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Elob-201ENSMUST00000069579 508 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 AC164107.1-201ENSMUST00000227730 2161 ntBASIC12.54□□□□□ -0.4
Sox1P53783 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.54□□□□□ -0.4
Sox1P53783 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Sox1P53783 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Sox1P53783 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sox1P53783 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC12.53□□□□□ -0.4
Sox1P53783 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Gm24934-201ENSMUST00000103764 111 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Gm25766-201ENSMUST00000104101 131 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Gm26286-201ENSMUST00000104166 134 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
Sox1P53783 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Gm12856-201ENSMUST00000119471 1293 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Gm24248-201ENSMUST00000157321 322 ntBASIC12.53□□□□□ -0.4
Sox1P53783 1700006J14Rik-204ENSMUST00000161511 574 ntTSL 3 BASIC12.53□□□□□ -0.4
Sox1P53783 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Gm6644-201ENSMUST00000186507 951 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Gm36982-201ENSMUST00000193796 1128 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
Sox1P53783 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC12.53□□□□□ -0.4
Sox1P53783 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Gm19863-201ENSMUST00000192480 2218 ntBASIC12.53□□□□□ -0.4
Sox1P53783 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sox1P53783 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sox1P53783 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Sox1P53783 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sox1P53783 Gm30238-201ENSMUST00000195528 2603 ntBASIC12.52□□□□□ -0.4
Sox1P53783 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.52□□□□□ -0.41
Sox1P53783 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC12.52□□□□□ -0.41
Sox1P53783 Gm26134-201ENSMUST00000178484 110 ntBASIC12.52□□□□□ -0.41
Sox1P53783 Gm24954-201ENSMUST00000178831 110 ntBASIC12.52□□□□□ -0.41
Sox1P53783 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Sox1P53783 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC12.52□□□□□ -0.41
Sox1P53783 1700011B04Rik-212ENSMUST00000223526 889 ntTSL 5 BASIC12.52□□□□□ -0.41
Sox1P53783 Gm10728-201ENSMUST00000194292 1829 ntBASIC12.52□□□□□ -0.41
Sox1P53783 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.52□□□□□ -0.41
Sox1P53783 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.52□□□□□ -0.41
Sox1P53783 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
Sox1P53783 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sox1P53783 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms