Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 Abca2-201ENSMUST00000102919 8033 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Rxra-206ENSMUST00000166775 3216 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.04□□□□□ -0.8
Sdc1P18828 Nfx1-203ENSMUST00000098143 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Hspa5-201ENSMUST00000028222 3672 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Dtl-201ENSMUST00000027933 4212 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm18630-201ENSMUST00000222109 1397 ntBASIC10.04□□□□□ -0.8
Sdc1P18828 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Glyctk-202ENSMUST00000112543 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
Sdc1P18828 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
Sdc1P18828 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm43125-201ENSMUST00000201724 730 ntBASIC10.04□□□□□ -0.8
Sdc1P18828 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC10.04□□□□□ -0.8
Sdc1P18828 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Spesp1-201ENSMUST00000056949 3042 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Abi2-207ENSMUST00000188618 4723 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC10.04□□□□□ -0.8
Sdc1P18828 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC10.04□□□□□ -0.8
Sdc1P18828 Lgals8-201ENSMUST00000099820 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Gm13517-201ENSMUST00000120782 1495 ntBASIC10.04□□□□□ -0.8
Sdc1P18828 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
Sdc1P18828 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Sdc1P18828 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC10.03□□□□□ -0.8
Sdc1P18828 Fbxo40-201ENSMUST00000075869 5137 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Tctn1-201ENSMUST00000111738 5717 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Agpat3-211ENSMUST00000166360 3439 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC10.03□□□□□ -0.8
Sdc1P18828 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Tmem168-206ENSMUST00000149123 3337 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Wdr43-201ENSMUST00000047086 3450 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Tcof1-204ENSMUST00000176630 4529 ntAPPRIS P3 TSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC10.03□□□□□ -0.8
Sdc1P18828 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm8410-201ENSMUST00000117225 605 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm12384-201ENSMUST00000119228 919 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm26464-201ENSMUST00000157094 305 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.8
Sdc1P18828 Gm27494-201ENSMUST00000184735 189 ntBASIC10.03□□□□□ -0.8
Sdc1P18828 Gm27741-201ENSMUST00000185060 237 ntBASIC10.03□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms