Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm11511-201ENSMUST00000118146 540 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 H2-Q3-201ENSMUST00000172583 608 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm8956-201ENSMUST00000203939 825 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm19208-201ENSMUST00000213861 912 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm10152-201ENSMUST00000193475 1344 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Map1b-203ENSMUST00000223725 2669 ntBASIC17.3■□□□□ 0.36
Usp47Q8BY87 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Usp47Q8BY87 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 B9d1os-201ENSMUST00000137010 674 ntBASIC17.29■□□□□ 0.36
Usp47Q8BY87 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Ncln-201ENSMUST00000020463 3118 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Tshz2-202ENSMUST00000109159 4314 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Pank4-202ENSMUST00000070953 2706 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Usp47Q8BY87 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Gm23596-201ENSMUST00000104304 132 ntBASIC17.28■□□□□ 0.36
Usp47Q8BY87 Rpsa-ps12-201ENSMUST00000120596 892 ntBASIC17.28■□□□□ 0.36
Usp47Q8BY87 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Gm8343-201ENSMUST00000182705 994 ntBASIC17.28■□□□□ 0.36
Usp47Q8BY87 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 CT009757.3-201ENSMUST00000223367 2320 ntBASIC17.28■□□□□ 0.36
Usp47Q8BY87 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Gm9072-201ENSMUST00000218390 1514 ntBASIC17.28■□□□□ 0.36
Usp47Q8BY87 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Tmem206-201ENSMUST00000027940 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Usp47Q8BY87 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 64.6 ms