Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Gm16296-201ENSMUST00000159905 325 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Olfr455-201ENSMUST00000171307 954 ntAPPRIS P1 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Tgif2-ps1-201ENSMUST00000203590 713 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Tyms-ps-201ENSMUST00000219550 915 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 AC165260.3-202ENSMUST00000224550 1031 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 AC069562.3-201ENSMUST00000225387 587 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 AC122459.1-201ENSMUST00000228373 885 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Robo4-201ENSMUST00000102895 3226 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Mul1-202ENSMUST00000105813 3944 ntTSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
Ccdc40Q8BI79 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Nrsn2-201ENSMUST00000079278 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Cdadc1-208ENSMUST00000225839 3189 ntAPPRIS ALT2 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gm13492-201ENSMUST00000119772 665 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gm40466-201ENSMUST00000212174 422 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 AC022775.2-201ENSMUST00000227885 646 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 AC169036.1-201ENSMUST00000227994 296 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Ccdc40Q8BI79 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rgs12-201ENSMUST00000030984 5472 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Axl-202ENSMUST00000085948 3899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Gm15703-201ENSMUST00000120250 880 ntBASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Gm6266-201ENSMUST00000203844 806 ntBASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rpl18-208ENSMUST00000211061 552 ntTSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 56.5 ms