Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm13996-201ENSMUST00000118456 430 ntBASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm4034-201ENSMUST00000187674 480 ntBASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.52□□□□□ -0.09
Trim56Q80VI1 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trim56Q80VI1 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm37131-201ENSMUST00000192502 1561 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm14130-201ENSMUST00000118417 987 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm14208-201ENSMUST00000119645 678 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm7722-201ENSMUST00000120646 741 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm12164-201ENSMUST00000121695 551 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm4959-201ENSMUST00000197271 1044 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gm9176-201ENSMUST00000219955 1120 ntBASIC14.51□□□□□ -0.09
Trim56Q80VI1 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trim56Q80VI1 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC14.5□□□□□ -0.09
Trim56Q80VI1 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Gm37666-201ENSMUST00000194110 866 ntBASIC14.5□□□□□ -0.09
Trim56Q80VI1 AC159205.5-202ENSMUST00000224849 386 ntBASIC14.5□□□□□ -0.09
Trim56Q80VI1 Rassf8-202ENSMUST00000058538 1131 ntBASIC14.5□□□□□ -0.09
Trim56Q80VI1 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Snap23-202ENSMUST00000110711 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trim56Q80VI1 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trim56Q80VI1 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms