Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Gm30285-201ENSMUST00000214614 422 ntBASIC14.52□□□□□ -0.09
Limch1Q3UH68 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.52□□□□□ -0.09
Limch1Q3UH68 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Gm24136-201ENSMUST00000083374 165 ntBASIC14.52□□□□□ -0.09
Limch1Q3UH68 Gm22058-201ENSMUST00000083393 310 ntBASIC14.52□□□□□ -0.09
Limch1Q3UH68 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Nupl1-206ENSMUST00000225111 2936 ntBASIC14.52□□□□□ -0.09
Limch1Q3UH68 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Pde1c-209ENSMUST00000203372 3147 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
Limch1Q3UH68 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Limch1Q3UH68 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC14.51□□□□□ -0.09
Limch1Q3UH68 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Dpp9-201ENSMUST00000038794 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC14.51□□□□□ -0.09
Limch1Q3UH68 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Limch1Q3UH68 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm24830-201ENSMUST00000102024 166 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm13315-201ENSMUST00000120376 991 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm12715-201ENSMUST00000121430 1128 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 1700003G18Rik-201ENSMUST00000140689 633 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm25890-201ENSMUST00000177643 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Rnu1b2-201ENSMUST00000178073 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Rnu1b1-201ENSMUST00000178250 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm22614-201ENSMUST00000178300 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm26956-201ENSMUST00000182176 986 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC14.5□□□□□ -0.09
Limch1Q3UH68 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm5904-201ENSMUST00000210286 865 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 AC155637.1-201ENSMUST00000218560 636 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm22042-201ENSMUST00000082989 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm26232-201ENSMUST00000083360 166 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Rnu1b6-201ENSMUST00000083839 166 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Gm26110-201ENSMUST00000083971 165 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 Nudt18-202ENSMUST00000228554 3619 ntBASIC14.5□□□□□ -0.09
Limch1Q3UH68 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Limch1Q3UH68 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms