Protein–RNA interactions for Protein: P28862

Mmp3, Stromelysin-1, mousemouse

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp3P28862 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Mmp3P28862 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Mmp3P28862 Gm23912-201ENSMUST00000104687 87 ntBASIC13.17□□□□□ -0.3
Mmp3P28862 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Mmp3P28862 Gm9062-201ENSMUST00000117712 727 ntBASIC13.17□□□□□ -0.3
Mmp3P28862 Gm12196-201ENSMUST00000120954 262 ntBASIC13.17□□□□□ -0.3
Mmp3P28862 Gm12164-201ENSMUST00000121695 551 ntBASIC13.17□□□□□ -0.3
Mmp3P28862 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.17□□□□□ -0.3
Mmp3P28862 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Gm43184-201ENSMUST00000197247 542 ntBASIC13.17□□□□□ -0.3
Mmp3P28862 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Mmp3P28862 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC13.17□□□□□ -0.3
Mmp3P28862 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Lrpprc-201ENSMUST00000112308 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Mmp3P28862 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Mmp3P28862 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Mmp3P28862 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Mmp3P28862 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 AC154671.1-201ENSMUST00000228617 1578 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 AC171277.1-201ENSMUST00000216902 1441 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 Gm12501-201ENSMUST00000119163 529 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.16□□□□□ -0.3
Mmp3P28862 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Gm25881-201ENSMUST00000157783 103 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Gm22334-201ENSMUST00000158070 133 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Mmp3P28862 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Gm9630-201ENSMUST00000178304 885 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC13.16□□□□□ -0.3
Mmp3P28862 Gm26448-201ENSMUST00000082446 203 ntBASIC13.16□□□□□ -0.3
Mmp3P28862 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Ablim1-202ENSMUST00000099294 6232 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Mmp3P28862 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Mmp3P28862 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.15□□□□□ -0.3
Mmp3P28862 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Mmp3P28862 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC13.15□□□□□ -0.3
Mmp3P28862 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Per2-201ENSMUST00000069620 5833 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
Mmp3P28862 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC13.15□□□□□ -0.3
Mmp3P28862 Gm13611-201ENSMUST00000118269 318 ntBASIC13.15□□□□□ -0.3
Mmp3P28862 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Mmp3P28862 Mir1943-201ENSMUST00000158276 73 ntBASIC13.15□□□□□ -0.3
Mmp3P28862 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Mmp3P28862 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms