Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Sdc1P18828 Gm6263-201ENSMUST00000120029 1342 ntBASIC10.07□□□□□ -0.8
Sdc1P18828 Elavl2-204ENSMUST00000107110 3671 ntAPPRIS ALT1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Abhd6-203ENSMUST00000225234 1958 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 Gm45428-201ENSMUST00000209619 1789 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Slc45a3-201ENSMUST00000027695 3340 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Mecom-202ENSMUST00000108270 5692 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Pdia4-201ENSMUST00000077290 2399 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Gm27533-201ENSMUST00000183800 152 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Rgr-203ENSMUST00000225070 4704 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Cit-202ENSMUST00000102560 6213 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC10.06□□□□□ -0.8
Sdc1P18828 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Serinc4-202ENSMUST00000110613 2240 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Srrt-201ENSMUST00000040873 3024 ntAPPRIS P3 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
Sdc1P18828 Pcnt-201ENSMUST00000001179 9331 ntAPPRIS P2 TSL 2 BASIC10.06□□□□□ -0.8
Sdc1P18828 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC10.06□□□□□ -0.8
Sdc1P18828 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Srp54b-202ENSMUST00000218879 3642 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 1700019D03Rik-201ENSMUST00000050567 3641 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC10.06□□□□□ -0.8
Sdc1P18828 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Pknox1-206ENSMUST00000176701 4232 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Sdc1P18828 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Kir3dl2-202ENSMUST00000113108 1932 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Tmeff2-201ENSMUST00000081851 3343 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Acad8-202ENSMUST00000120367 2885 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Stx1b-201ENSMUST00000106267 4536 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 D6Ertd527e-201ENSMUST00000170124 2161 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm42141-201ENSMUST00000196534 2172 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 S100pbp-203ENSMUST00000106059 4084 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Ror2-202ENSMUST00000130235 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Csnk1g1-202ENSMUST00000117849 5173 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Rgs3-202ENSMUST00000084521 3888 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm9755-201ENSMUST00000032981 1356 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm12280-201ENSMUST00000155836 1624 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
Sdc1P18828 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm14921-201ENSMUST00000118643 908 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 Gm9103-201ENSMUST00000119371 405 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC10.05□□□□□ -0.8
Sdc1P18828 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 AC173210.1-201ENSMUST00000222341 1131 ntBASIC10.05□□□□□ -0.8
Sdc1P18828 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
Sdc1P18828 Tmem25-202ENSMUST00000114705 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC10.05□□□□□ -0.8
Sdc1P18828 Tpx2-206ENSMUST00000164120 4365 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
Sdc1P18828 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms