Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Gm11439-201ENSMUST00000118598 409 ntBASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Gm27430-201ENSMUST00000184585 107 ntBASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Gm44333-201ENSMUST00000197168 107 ntBASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 AC090659.2-201ENSMUST00000225378 1186 ntBASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Krtap9-3-201ENSMUST00000062683 759 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Ccdc9Q8VC31 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Ezr-201ENSMUST00000064234 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Scnn1b-201ENSMUST00000033161 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Gm25144-201ENSMUST00000179561 110 ntBASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Gm25352-201ENSMUST00000179815 110 ntBASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 1190007I07Rik-204ENSMUST00000183416 637 ntTSL 2 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Gm5779-201ENSMUST00000218467 910 ntBASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Tmcc2-201ENSMUST00000045473 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Hectd4-201ENSMUST00000042614 15482 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Armcx6-201ENSMUST00000052431 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Rgs12-203ENSMUST00000114280 2777 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Ccdc9Q8VC31 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Nras-201ENSMUST00000029445 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Pip5k1a-204ENSMUST00000107232 3437 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Ddah1-202ENSMUST00000120310 2291 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm45206-201ENSMUST00000206885 2285 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm6415-201ENSMUST00000118488 348 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 AA543401-201ENSMUST00000164248 1269 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm37171-201ENSMUST00000192636 1185 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 AC149588.3-201ENSMUST00000227515 150 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm21136-201ENSMUST00000186812 2575 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Gm6605-201ENSMUST00000031488 2574 ntBASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Sorbs3-201ENSMUST00000022682 2914 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Pitpnc1-202ENSMUST00000103064 6329 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Fasn-205ENSMUST00000206589 8333 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Ilf3-202ENSMUST00000115414 3606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Slc9a3r2-202ENSMUST00000019684 1688 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Ccdc9Q8VC31 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Gm14132-201ENSMUST00000117188 1719 ntBASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Mpl-202ENSMUST00000102671 2934 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Lamb1-205ENSMUST00000169088 5557 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Ccdc9Q8VC31 Nectin4-201ENSMUST00000006578 3636 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Actr1a-201ENSMUST00000040270 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 C130050O18Rik-201ENSMUST00000052176 1532 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Tspan14-202ENSMUST00000224209 2477 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Ppp1r18-201ENSMUST00000113814 3131 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Pax6-225ENSMUST00000167211 2814 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Gal3st4-201ENSMUST00000100530 3162 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Ccdc9Q8VC31 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms