Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Gm31256-201ENSMUST00000194705 506 ntBASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Gm22058-201ENSMUST00000083393 310 ntBASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Ushbp1Q8R370 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm13315-201ENSMUST00000120376 991 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm9678-201ENSMUST00000198979 1149 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm19963-201ENSMUST00000208413 1255 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm5904-201ENSMUST00000210286 865 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
Ushbp1Q8R370 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm14277-201ENSMUST00000121195 360 ntBASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Mir5120-201ENSMUST00000175020 78 ntBASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm44405-201ENSMUST00000198952 126 ntBASIC13.84□□□□□ -0.19
Ushbp1Q8R370 Gm44967-201ENSMUST00000207047 631 ntBASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms