Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Gm6019-201ENSMUST00000148369 736 ntBASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm8343-201ENSMUST00000182705 994 ntBASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm45120-201ENSMUST00000208880 408 ntBASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm9785-201ENSMUST00000062642 1006 ntBASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Clec4b1-202ENSMUST00000078559 748 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 CT571245.2-201ENSMUST00000218421 305 ntBASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Nr2c2-201ENSMUST00000113460 7647 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Col6a6Q8C6K9 Gm8798-201ENSMUST00000211877 1661 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm9129-201ENSMUST00000218173 1689 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm26286-201ENSMUST00000104166 134 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm2965-201ENSMUST00000198365 343 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm2875-201ENSMUST00000211333 360 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm4157-201ENSMUST00000211647 679 ntBASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Hacd4-201ENSMUST00000030221 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Sept4-203ENSMUST00000107960 1653 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Col6a6Q8C6K9 Gm15703-201ENSMUST00000120250 880 ntBASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Col6a6Q8C6K9 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC11.12□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms