Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Mcfd2-204ENSMUST00000144236 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Usp47Q8BY87 Ntrk2-204ENSMUST00000224259 3049 ntBASIC17.35■□□□□ 0.37
Usp47Q8BY87 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm16168-201ENSMUST00000161091 1359 ntTSL 3 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm26286-201ENSMUST00000104166 134 ntBASIC17.34■□□□□ 0.37
Usp47Q8BY87 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm5369-201ENSMUST00000217499 588 ntBASIC17.34■□□□□ 0.37
Usp47Q8BY87 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Usp47Q8BY87 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 A530020G20Rik-202ENSMUST00000181070 3660 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Usp47Q8BY87 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm18734-201ENSMUST00000172937 808 ntBASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm5706-201ENSMUST00000181525 993 ntBASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm28071-201ENSMUST00000190355 478 ntBASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm18038-201ENSMUST00000197900 485 ntBASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Usp47Q8BY87 Gm5847-201ENSMUST00000178959 1595 ntBASIC17.33■□□□□ 0.36
Usp47Q8BY87 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Ighv1-60-201ENSMUST00000195816 405 ntBASIC17.32■□□□□ 0.36
Usp47Q8BY87 Gm18893-201ENSMUST00000198416 943 ntBASIC17.32■□□□□ 0.36
Usp47Q8BY87 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Usp47Q8BY87 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Usp47Q8BY87 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Gm12266-201ENSMUST00000120311 962 ntBASIC17.31■□□□□ 0.36
Usp47Q8BY87 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC17.31■□□□□ 0.36
Usp47Q8BY87 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 4930448A20Rik-201ENSMUST00000205988 1034 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Mir219a-1-201ENSMUST00000083621 110 ntBASIC17.31■□□□□ 0.36
Usp47Q8BY87 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Fastkd3-201ENSMUST00000051784 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Usp47Q8BY87 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms