Protein–RNA interactions for Protein: Q6PR54

Rif1, Telomere-associated protein RIF1, mousemouse

Known RBP Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rif1Q6PR54 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm12314-201ENSMUST00000118104 538 ntBASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm12986-201ENSMUST00000119037 967 ntBASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm7899-201ENSMUST00000192935 1897 ntBASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gm44645-201ENSMUST00000205492 1653 ntBASIC10.46□□□□□ -0.74
Rif1Q6PR54 CT009536.2-201ENSMUST00000225370 665 ntBASIC10.46□□□□□ -0.74
Rif1Q6PR54 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Mt4-201ENSMUST00000034207 398 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
Rif1Q6PR54 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Snx12-202ENSMUST00000120389 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Wls-205ENSMUST00000198878 2050 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm28651-201ENSMUST00000185335 644 ntTSL 3 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm45085-201ENSMUST00000209100 441 ntBASIC10.45□□□□□ -0.74
Rif1Q6PR54 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 1810013D15Rik-201ENSMUST00000029827 300 ntTSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Nhlh2-203ENSMUST00000198675 3943 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Prickle3-203ENSMUST00000129662 2376 ntAPPRIS ALT2 TSL 2 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm18210-201ENSMUST00000209001 1524 ntBASIC10.45□□□□□ -0.74
Rif1Q6PR54 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Mocs2-216ENSMUST00000184672 1447 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm14704-201ENSMUST00000120300 874 ntBASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Hpf1-201ENSMUST00000037190 1191 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Cacna2d1-203ENSMUST00000101581 3879 ntAPPRIS P2 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Cacna2d1-206ENSMUST00000180204 3882 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
Rif1Q6PR54 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Msh3-202ENSMUST00000185852 3946 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Trmt1-205ENSMUST00000125370 2114 ntAPPRIS ALT2 TSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm8343-201ENSMUST00000182705 994 ntBASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm38103-201ENSMUST00000191707 864 ntBASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 AC154759.1-201ENSMUST00000224137 1159 ntBASIC10.44□□□□□ -0.74
Rif1Q6PR54 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Ranbp3-201ENSMUST00000002445 2511 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Rif1Q6PR54 Glmn-202ENSMUST00000082121 1945 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 483 ms