Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Mrps22-201ENSMUST00000035034 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Trim61-201ENSMUST00000078409 1977 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Nr1h4Q60641 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.78□□□□□ -0.52
Nr1h4Q60641 Ssh1-201ENSMUST00000077689 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Snord83b-201ENSMUST00000104546 94 ntBASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gm13134-202ENSMUST00000144347 387 ntTSL 2 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gm24526-201ENSMUST00000082921 158 ntBASIC11.78□□□□□ -0.52
Nr1h4Q60641 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 AL645783.1-201ENSMUST00000221416 1832 ntBASIC11.78□□□□□ -0.52
Nr1h4Q60641 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Abca3-202ENSMUST00000079594 6380 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
Nr1h4Q60641 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
Nr1h4Q60641 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Nr1h4Q60641 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.77□□□□□ -0.52
Nr1h4Q60641 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Nr1h4Q60641 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Nr1h4Q60641 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Gm27331-201ENSMUST00000183705 60 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 Mir6977-201ENSMUST00000184960 64 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Gm4768-201ENSMUST00000206199 686 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Tex26-201ENSMUST00000031667 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Ndufa4l2-201ENSMUST00000035735 934 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Sertad2-201ENSMUST00000093292 5647 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Gm14132-201ENSMUST00000117188 1719 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 CT009713.5-203ENSMUST00000224218 2079 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Cog3-203ENSMUST00000227473 4197 ntBASIC11.77□□□□□ -0.53
Nr1h4Q60641 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Nr1h4Q60641 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Prkcsh-202ENSMUST00000115331 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Nr1h4Q60641 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms