Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Gm38049-201ENSMUST00000195698 1372 ntBASIC11.88□□□□□ -0.51
Sox3P53784 Gm43081-201ENSMUST00000199082 1380 ntBASIC11.88□□□□□ -0.51
Sox3P53784 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Sox3P53784 Gm13722-201ENSMUST00000117964 3066 ntBASIC11.88□□□□□ -0.51
Sox3P53784 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Sox3P53784 Gm3052-202ENSMUST00000188254 2224 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC11.87□□□□□ -0.51
Sox3P53784 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Sox3P53784 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
Sox3P53784 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC11.87□□□□□ -0.51
Sox3P53784 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC11.87□□□□□ -0.51
Sox3P53784 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Gm27046-201ENSMUST00000182160 463 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Sox3P53784 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 n-R5s77-201ENSMUST00000083757 119 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
Sox3P53784 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Gm37391-201ENSMUST00000194891 2318 ntBASIC11.87□□□□□ -0.51
Sox3P53784 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Sox3P53784 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Tmem104-201ENSMUST00000061450 4564 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Nrd1-201ENSMUST00000065977 4311 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Sox3P53784 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Sox3P53784 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Sox3P53784 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Sox3P53784 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
Sox3P53784 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm14109-201ENSMUST00000118814 309 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Sox3P53784 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC11.86□□□□□ -0.51
Sox3P53784 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm9004-201ENSMUST00000218739 1222 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
Sox3P53784 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Sox3P53784 Gm44292-201ENSMUST00000205194 2364 ntBASIC11.86□□□□□ -0.51
Sox3P53784 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 60.4 ms