Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Camk4-201ENSMUST00000042868 12331 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Dusp19-201ENSMUST00000028384 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Mir877-201ENSMUST00000104738 85 ntBASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Gm19994-201ENSMUST00000217086 586 ntBASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Cpsf3Q9QXK7 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm14644-201ENSMUST00000116671 647 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm6963-201ENSMUST00000147879 379 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm5070-201ENSMUST00000177599 862 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm45691-201ENSMUST00000206905 1120 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm9996-201ENSMUST00000070359 913 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Mypopos-202ENSMUST00000205975 2321 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Ankfn1-201ENSMUST00000050983 2665 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Rubie-203ENSMUST00000227803 2430 ntBASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
Cpsf3Q9QXK7 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Rap1a-ps2-201ENSMUST00000118467 559 ntBASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm15808-201ENSMUST00000119046 604 ntBASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gzmn-202ENSMUST00000225535 989 ntBASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Dync1i1-204ENSMUST00000115559 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Cpsf3Q9QXK7 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 49 ms