Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Mtap-201ENSMUST00000058030 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Lima1Q9ERG0 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Smim1-208ENSMUST00000143047 3373 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Slamf8-201ENSMUST00000065679 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm8805-201ENSMUST00000117848 313 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm42599-201ENSMUST00000201308 469 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm7653-201ENSMUST00000214567 508 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm5035-201ENSMUST00000215581 927 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mir339-201ENSMUST00000083659 96 ntBASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Gprc5c-208ENSMUST00000177952 1809 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Lima1Q9ERG0 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Snap23-201ENSMUST00000028743 2658 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm37497-201ENSMUST00000195830 798 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 AC155237.1-201ENSMUST00000226196 1279 ntBASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Lima1Q9ERG0 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms