Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Ap1g2-211ENSMUST00000170285 2596 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Gm8908-201ENSMUST00000121633 1024 ntBASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Mospd4-201ENSMUST00000180618 576 ntBASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Gnb4-208ENSMUST00000193050 423 ntTSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Ddx56Q9D0R4 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm12742-201ENSMUST00000117326 410 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm14127-201ENSMUST00000117906 678 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm13875-201ENSMUST00000120162 282 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm14999-201ENSMUST00000121039 624 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm27390-201ENSMUST00000184516 176 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 AC153962.4-201ENSMUST00000217878 242 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 AC153974.2-201ENSMUST00000218577 1025 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gemin7-201ENSMUST00000051364 763 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Ddx56Q9D0R4 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Ddx56Q9D0R4 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ddx56Q9D0R4 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Ddx56Q9D0R4 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC13.02□□□□□ -0.33
Ddx56Q9D0R4 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Ddx56Q9D0R4 Gm11793-201ENSMUST00000120433 981 ntBASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 67.1 ms