Protein–RNA interactions for Protein: Q62205

Scn9a, Sodium channel protein type 9 subunit alpha, mousemouse

Predictions only

Length 1,984 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9aQ62205 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Bmp4-202ENSMUST00000100676 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Scn9aQ62205 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.31□□□□□ -0.12
Scn9aQ62205 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Gng12-205ENSMUST00000114226 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm12218-201ENSMUST00000117666 399 ntBASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm44506-201ENSMUST00000206278 965 ntBASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Gm3318-201ENSMUST00000217604 1183 ntBASIC14.31□□□□□ -0.12
Scn9aQ62205 Lgi3-203ENSMUST00000226548 1001 ntBASIC14.31□□□□□ -0.12
Scn9aQ62205 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC14.31□□□□□ -0.12
Scn9aQ62205 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Scn9aQ62205 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Scn9aQ62205 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC14.3□□□□□ -0.12
Scn9aQ62205 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm25766-201ENSMUST00000104101 131 ntBASIC14.3□□□□□ -0.12
Scn9aQ62205 2810403D21Rik-208ENSMUST00000153212 1005 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Nudt12-203ENSMUST00000174122 1244 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm8342-201ENSMUST00000209839 757 ntBASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm45500-201ENSMUST00000211676 803 ntBASIC14.3□□□□□ -0.12
Scn9aQ62205 AC154572.1-201ENSMUST00000226098 1204 ntBASIC14.3□□□□□ -0.12
Scn9aQ62205 Trpv1-201ENSMUST00000006106 2340 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Scn9aQ62205 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Scn9aQ62205 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Scn9aQ62205 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.3□□□□□ -0.12
Scn9aQ62205 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Sympk-201ENSMUST00000023882 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm23272-201ENSMUST00000104053 129 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Ralyl-202ENSMUST00000108373 267 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm15004-201ENSMUST00000119192 630 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm19587-201ENSMUST00000191395 545 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm3726-201ENSMUST00000203110 785 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm18706-201ENSMUST00000210053 1066 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm4924-205ENSMUST00000211099 490 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gm40879-201ENSMUST00000220759 612 ntBASIC14.29□□□□□ -0.12
Scn9aQ62205 Mcts2-201ENSMUST00000062148 917 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Scn9aQ62205 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Scn9aQ62205 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms