Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Zfp512-208ENSMUST00000202244 3045 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Slc6a6-201ENSMUST00000032185 6186 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm15371-201ENSMUST00000117057 784 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm14921-201ENSMUST00000118643 908 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm16342-201ENSMUST00000124025 1025 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 4930407G08Rik-201ENSMUST00000145831 698 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm6983-201ENSMUST00000214912 628 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Chd3os-203ENSMUST00000218008 1026 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Dctn4-202ENSMUST00000223590 1530 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm13050-201ENSMUST00000122149 1345 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Gm18222-201ENSMUST00000202416 1387 ntBASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Col28a1Q2UY11 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Etaa1-201ENSMUST00000076661 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Gm13612-201ENSMUST00000119276 390 ntBASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Gm20652-201ENSMUST00000177314 383 ntTSL 2 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Gm24196-201ENSMUST00000179161 110 ntBASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Lsmem2-201ENSMUST00000191791 369 ntTSL 3 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Ceacam10-201ENSMUST00000038069 1048 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Rps5-201ENSMUST00000004554 761 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.04□□□□□ -0.48
Col28a1Q2UY11 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Col28a1Q2UY11 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Col28a1Q2UY11 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.03□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms