Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col3a1P08121 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Fcna-201ENSMUST00000028307 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col3a1P08121 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Col3a1P08121 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm12579-201ENSMUST00000118040 783 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Gm14665-201ENSMUST00000122294 557 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
Col3a1P08121 Gm37246-201ENSMUST00000192665 835 ntBASIC14.63□□□□□ -0.07
Col3a1P08121 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC14.63□□□□□ -0.07
Col3a1P08121 AC101677.2-201ENSMUST00000218733 741 ntTSL 3 BASIC14.63□□□□□ -0.07
Col3a1P08121 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Col3a1P08121 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Pisd-ps2-201ENSMUST00000127960 1424 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Col3a1P08121 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.62□□□□□ -0.07
Col3a1P08121 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 AC091458.1-201ENSMUST00000220902 1361 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Col3a1P08121 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Rabgef1-203ENSMUST00000119797 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Gm11660-201ENSMUST00000120955 412 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Mup-ps26-201ENSMUST00000121751 202 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Gm8815-201ENSMUST00000173809 620 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Gm38117-201ENSMUST00000194653 939 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC14.62□□□□□ -0.07
Col3a1P08121 AC154290.1-201ENSMUST00000223786 1240 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col3a1P08121 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Col3a1P08121 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
Col3a1P08121 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Gm44999-201ENSMUST00000207456 1493 ntBASIC14.62□□□□□ -0.07
Col3a1P08121 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Col3a1P08121 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col3a1P08121 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.61□□□□□ -0.07
Col3a1P08121 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Ighv1-61-201ENSMUST00000103531 351 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col3a1P08121 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Col3a1P08121 Gm11663-201ENSMUST00000117888 290 ntBASIC14.61□□□□□ -0.07
Col3a1P08121 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC14.61□□□□□ -0.07
Col3a1P08121 Gm19459-201ENSMUST00000176240 835 ntBASIC14.61□□□□□ -0.07
Col3a1P08121 BC026585-203ENSMUST00000193791 778 ntTSL 2 BASIC14.61□□□□□ -0.07
Col3a1P08121 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC14.61□□□□□ -0.07
Col3a1P08121 Gm6867-201ENSMUST00000219165 425 ntBASIC14.61□□□□□ -0.07
Col3a1P08121 AC140293.1-201ENSMUST00000225626 1247 ntBASIC14.61□□□□□ -0.07
Col3a1P08121 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Platr7-201ENSMUST00000181466 1334 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Col3a1P08121 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms