Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Usf1Q61069 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC11.31□□□□□ -0.6
Usf1Q61069 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm11675-201ENSMUST00000121873 832 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC11.31□□□□□ -0.6
Usf1Q61069 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Rn7s6-201ENSMUST00000175005 291 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Gm6407-201ENSMUST00000176468 549 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Pcgf1-207ENSMUST00000177177 854 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm8100-201ENSMUST00000182906 988 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm9463-201ENSMUST00000206707 601 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm40709-203ENSMUST00000219695 973 ntTSL 5 BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.31□□□□□ -0.6
Usf1Q61069 AC099645.1-201ENSMUST00000226476 1105 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm5455-201ENSMUST00000058710 715 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Gm10288-201ENSMUST00000084614 537 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm9947-201ENSMUST00000067599 2920 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gm43364-201ENSMUST00000196046 3274 ntBASIC11.31□□□□□ -0.6
Usf1Q61069 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Usf1Q61069 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Alg2-201ENSMUST00000044148 3021 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC11.3□□□□□ -0.6
Usf1Q61069 C230038L03Rik-202ENSMUST00000136294 1197 ntTSL 2 BASIC11.3□□□□□ -0.6
Usf1Q61069 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm6397-201ENSMUST00000161973 1069 ntBASIC11.3□□□□□ -0.6
Usf1Q61069 Gm9022-201ENSMUST00000182482 992 ntBASIC11.3□□□□□ -0.6
Usf1Q61069 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm44958-201ENSMUST00000203734 736 ntBASIC11.3□□□□□ -0.6
Usf1Q61069 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm45909-201ENSMUST00000212413 1031 ntBASIC11.3□□□□□ -0.6
Usf1Q61069 Tas2r126-201ENSMUST00000059534 930 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Usf1Q61069 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm7551-201ENSMUST00000089593 1074 ntBASIC11.3□□□□□ -0.6
Usf1Q61069 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Usf1Q61069 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Usf1Q61069 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Usf1Q61069 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC11.29□□□□□ -0.6
Usf1Q61069 Gm45342-201ENSMUST00000210903 1363 ntBASIC11.29□□□□□ -0.6
Usf1Q61069 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC11.29□□□□□ -0.6
Usf1Q61069 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Usf1Q61069 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 77 ms