Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC14.38□□□□□ -0.11
Col1a1P11087 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col1a1P11087 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.38□□□□□ -0.11
Col1a1P11087 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Col1a1P11087 Use1-202ENSMUST00000110053 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col1a1P11087 Gm16166-201ENSMUST00000118291 787 ntBASIC14.38□□□□□ -0.11
Col1a1P11087 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC14.38□□□□□ -0.11
Col1a1P11087 Gm15207-201ENSMUST00000119259 442 ntBASIC14.38□□□□□ -0.11
Col1a1P11087 Gm11836-201ENSMUST00000121022 441 ntBASIC14.38□□□□□ -0.11
Col1a1P11087 Gm12628-201ENSMUST00000122193 382 ntBASIC14.38□□□□□ -0.11
Col1a1P11087 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC14.38□□□□□ -0.11
Col1a1P11087 Rhox5-201ENSMUST00000179626 633 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col1a1P11087 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
Col1a1P11087 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC14.38□□□□□ -0.11
Col1a1P11087 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC14.38□□□□□ -0.11
Col1a1P11087 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Col1a1P11087 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Pstpip2-201ENSMUST00000114741 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Pigk-201ENSMUST00000045029 1761 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Gm15004-201ENSMUST00000119192 630 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Gm14219-201ENSMUST00000120414 288 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Gm4310-201ENSMUST00000177847 889 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Ccl19-ps3-201ENSMUST00000179634 324 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Gm12407-201ENSMUST00000180219 324 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC14.37□□□□□ -0.11
Col1a1P11087 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC14.37□□□□□ -0.11
Col1a1P11087 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
Col1a1P11087 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 AC118476.3-201ENSMUST00000216419 1219 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 1700012P22Rik-201ENSMUST00000030323 974 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Col1a1P11087 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Col1a1P11087 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 B430212C06Rik-205ENSMUST00000145081 2623 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col1a1P11087 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Gm13047-201ENSMUST00000117116 815 ntBASIC14.36□□□□□ -0.11
Col1a1P11087 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 1700039I01Rik-201ENSMUST00000194370 479 ntBASIC14.36□□□□□ -0.11
Col1a1P11087 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC14.36□□□□□ -0.11
Col1a1P11087 Gm45120-201ENSMUST00000208880 408 ntBASIC14.36□□□□□ -0.11
Col1a1P11087 AC154184.3-201ENSMUST00000225620 1090 ntBASIC14.36□□□□□ -0.11
Col1a1P11087 Gm10135-201ENSMUST00000043711 252 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Commd4-201ENSMUST00000065358 858 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 E130018N17Rik-201ENSMUST00000129713 1309 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col1a1P11087 Gm6903-201ENSMUST00000160509 1366 ntBASIC14.36□□□□□ -0.11
Col1a1P11087 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col1a1P11087 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col1a1P11087 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col1a1P11087 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC14.35□□□□□ -0.11
Col1a1P11087 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 79.3 ms