Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Trav4d-2-201ENSMUST00000120914 335 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm13316-201ENSMUST00000140537 691 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm43133-201ENSMUST00000197472 463 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm10076-201ENSMUST00000073238 384 ntBASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Ddx56Q9D0R4 Gm44241-201ENSMUST00000203230 1662 ntBASIC13.08□□□□□ -0.31
Ddx56Q9D0R4 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
Ddx56Q9D0R4 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.08□□□□□ -0.31
Ddx56Q9D0R4 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.08□□□□□ -0.31
Ddx56Q9D0R4 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.08□□□□□ -0.31
Ddx56Q9D0R4 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm27177-202ENSMUST00000183514 2703 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm12058-201ENSMUST00000118614 437 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm23119-201ENSMUST00000158610 140 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm5850-201ENSMUST00000192923 1206 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm38002-201ENSMUST00000193255 180 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 AY702102-202ENSMUST00000194651 1173 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm19309-201ENSMUST00000218295 205 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Ddx56Q9D0R4 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm9083-201ENSMUST00000120423 819 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm27023-201ENSMUST00000182372 285 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm39404-201ENSMUST00000216350 313 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 AC140406.1-201ENSMUST00000226481 465 ntBASIC13.07□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 90.7 ms