Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm25880-201ENSMUST00000104331 132 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Adam19-201ENSMUST00000011400 6383 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Tspo2-205ENSMUST00000162481 473 ntTSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 AY036118-201ENSMUST00000200021 923 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 AC073947.1-201ENSMUST00000216991 649 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 CT009713.8-202ENSMUST00000224732 385 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm10076-201ENSMUST00000073238 384 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ahi1-201ENSMUST00000105525 4851 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm6992-201ENSMUST00000217973 1607 ntBASIC10.64□□□□□ -0.71
Col8a1Q00780 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Col8a1Q00780 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Col8a1Q00780 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Myh6-205ENSMUST00000226297 6008 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Hk3-208ENSMUST00000153665 2945 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Gm5422-201ENSMUST00000050717 2721 ntBASIC10.63□□□□□ -0.71
Col8a1Q00780 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Mocs2-205ENSMUST00000165022 962 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Gm3671-201ENSMUST00000182463 1007 ntBASIC10.63□□□□□ -0.71
Col8a1Q00780 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC10.63□□□□□ -0.71
Col8a1Q00780 Gng8-204ENSMUST00000205716 432 ntAPPRIS P1 TSL 3 BASIC10.63□□□□□ -0.71
Col8a1Q00780 AC153937.1-201ENSMUST00000218734 412 ntBASIC10.63□□□□□ -0.71
Col8a1Q00780 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC10.63□□□□□ -0.71
Col8a1Q00780 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Stim1-201ENSMUST00000033289 4085 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Leo1-201ENSMUST00000048937 2180 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC10.63□□□□□ -0.71
Col8a1Q00780 Ptprk-202ENSMUST00000218276 4754 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 76.4 ms