Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Ralgps2-209ENSMUST00000189316 2924 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.15□□□□□ -0.3
Shmt1P50431 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Mlxip-201ENSMUST00000068237 7303 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Shmt1P50431 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Tnfrsf18-203ENSMUST00000122001 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC13.15□□□□□ -0.3
Shmt1P50431 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.15□□□□□ -0.3
Shmt1P50431 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.15□□□□□ -0.3
Shmt1P50431 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Shmt1P50431 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC13.15□□□□□ -0.3
Shmt1P50431 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.31
Shmt1P50431 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.15□□□□□ -0.31
Shmt1P50431 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.31
Shmt1P50431 AC126444.1-201ENSMUST00000225938 1768 ntBASIC13.15□□□□□ -0.31
Shmt1P50431 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.14□□□□□ -0.31
Shmt1P50431 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.14□□□□□ -0.31
Shmt1P50431 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Shmt1P50431 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC13.14□□□□□ -0.31
Shmt1P50431 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC13.14□□□□□ -0.31
Shmt1P50431 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Gm4760-201ENSMUST00000119663 1030 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC13.14□□□□□ -0.31
Shmt1P50431 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Rn7s1-201ENSMUST00000174924 300 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Rn7s2-201ENSMUST00000175032 300 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Gm26461-201ENSMUST00000175064 290 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Gm13097-201ENSMUST00000210722 397 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Psma1-201ENSMUST00000033008 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Shmt1P50431 Gm10312-201ENSMUST00000078515 489 ntBASIC13.14□□□□□ -0.31
Shmt1P50431 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Shmt1P50431 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Shmt1P50431 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Shmt1P50431 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.13□□□□□ -0.31
Shmt1P50431 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Shmt1P50431 Sun2-203ENSMUST00000100439 3768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Gm10782-202ENSMUST00000223775 1480 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 Gm2606-201ENSMUST00000100754 1002 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Gm12286-201ENSMUST00000119246 1002 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.13□□□□□ -0.31
Shmt1P50431 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.13□□□□□ -0.31
Shmt1P50431 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Shmt1P50431 Gm44958-201ENSMUST00000203734 736 ntBASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 54 ms