Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim39Q9ESN2 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Trim39Q9ESN2 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim39Q9ESN2 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim39Q9ESN2 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trim39Q9ESN2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim39Q9ESN2 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim39Q9ESN2 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Spry1-201ENSMUST00000038569 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim39Q9ESN2 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Gm10616-201ENSMUST00000205285 2127 ntBASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim39Q9ESN2 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim39Q9ESN2 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trim39Q9ESN2 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim39Q9ESN2 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim39Q9ESN2 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.26■□□□□ 0.67
Trim39Q9ESN2 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.26■□□□□ 0.67
Trim39Q9ESN2 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trim39Q9ESN2 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Trim39Q9ESN2 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Trim39Q9ESN2 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim39Q9ESN2 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trim39Q9ESN2 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 58.1 ms