Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.33■□□□□ 0.68
Cdc40Q9DC48 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Cdc40Q9DC48 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Cdc40Q9DC48 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Gm7417-201ENSMUST00000192950 473 ntBASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Cdc40Q9DC48 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.3■□□□□ 0.68
Cdc40Q9DC48 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Cdc40Q9DC48 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Cdc40Q9DC48 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC19.27■□□□□ 0.68
Cdc40Q9DC48 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Dmtn-209ENSMUST00000228295 2572 ntBASIC19.26■□□□□ 0.67
Cdc40Q9DC48 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Cdc40Q9DC48 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
Cdc40Q9DC48 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.23■□□□□ 0.67
Cdc40Q9DC48 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 20.1 ms