Protein–RNA interactions for Protein: Q99ML9

Rnf111, E3 ubiquitin-protein ligase Arkadia, mousemouse

Predictions only

Length 989 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf111Q99ML9 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.23■□□□□ 0.83
Rnf111Q99ML9 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.22■□□□□ 0.83
Rnf111Q99ML9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Gm34220-201ENSMUST00000223001 2709 ntBASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rnf111Q99ML9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf111Q99ML9 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Rnf111Q99ML9 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.2■□□□□ 0.82
Rnf111Q99ML9 Gm43403-201ENSMUST00000198011 1786 ntBASIC20.2■□□□□ 0.82
Rnf111Q99ML9 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf111Q99ML9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Rnf111Q99ML9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Iqck-206ENSMUST00000208658 2891 ntBASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Rnf111Q99ML9 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Rnf111Q99ML9 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf111Q99ML9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Rnf111Q99ML9 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf111Q99ML9 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.17■□□□□ 0.82
Rnf111Q99ML9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rnf111Q99ML9 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.17■□□□□ 0.82
Rnf111Q99ML9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Rnf111Q99ML9 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Selenoo-201ENSMUST00000082439 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Rnf111Q99ML9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Rnf111Q99ML9 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Rnf111Q99ML9 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rnf111Q99ML9 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Rnf111Q99ML9 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Rnf111Q99ML9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Rnf111Q99ML9 Otud3-201ENSMUST00000097830 1668 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Rnf111Q99ML9 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Rnf111Q99ML9 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Rnf111Q99ML9 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC20.1■□□□□ 0.81
Rnf111Q99ML9 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Rnf111Q99ML9 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf111Q99ML9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rnf111Q99ML9 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
Rnf111Q99ML9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 10.4 ms