Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ushbp1Q8R370 Msx3-202ENSMUST00000172775 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
Ushbp1Q8R370 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Ushbp1Q8R370 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC23.45■■□□□ 1.34
Ushbp1Q8R370 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Ushbp1Q8R370 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Ushbp1Q8R370 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC23.42■■□□□ 1.34
Ushbp1Q8R370 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
Ushbp1Q8R370 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Atn1-201ENSMUST00000088357 4433 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Gm12504-201ENSMUST00000120860 2231 ntBASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC23.4■■□□□ 1.34
Ushbp1Q8R370 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Ushbp1Q8R370 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Ushbp1Q8R370 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Ushbp1Q8R370 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
Ushbp1Q8R370 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.34
Ushbp1Q8R370 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC23.39■■□□□ 1.33
Ushbp1Q8R370 Gm5131-201ENSMUST00000212776 1238 ntBASIC23.39■■□□□ 1.33
Ushbp1Q8R370 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ushbp1Q8R370 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
Ushbp1Q8R370 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC23.39■■□□□ 1.33
Ushbp1Q8R370 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
Ushbp1Q8R370 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC23.37■■□□□ 1.33
Ushbp1Q8R370 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC23.37■■□□□ 1.33
Ushbp1Q8R370 AC164883.3-201ENSMUST00000227396 1774 ntBASIC23.37■■□□□ 1.33
Ushbp1Q8R370 AC158990.1-201ENSMUST00000221450 2016 ntBASIC23.37■■□□□ 1.33
Ushbp1Q8R370 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ushbp1Q8R370 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
Ushbp1Q8R370 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
Ushbp1Q8R370 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
Ushbp1Q8R370 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
Ushbp1Q8R370 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Gm6277-202ENSMUST00000224036 2779 ntBASIC23.35■■□□□ 1.33
Ushbp1Q8R370 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ushbp1Q8R370 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ushbp1Q8R370 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
Ushbp1Q8R370 AC116713.1-201ENSMUST00000215074 430 ntBASIC23.34■■□□□ 1.33
Ushbp1Q8R370 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Ushbp1Q8R370 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
Ushbp1Q8R370 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
Ushbp1Q8R370 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC23.33■■□□□ 1.33
Ushbp1Q8R370 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC23.33■■□□□ 1.33
Ushbp1Q8R370 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
Ushbp1Q8R370 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.32
Ushbp1Q8R370 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Ushbp1Q8R370 Gm7417-201ENSMUST00000192950 473 ntBASIC23.32■■□□□ 1.32
Retrieved 100 of 76,532 protein–RNA pairs in 14.2 ms