Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
Vps53Q8CCB4 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
Vps53Q8CCB4 Gm7417-201ENSMUST00000192950 473 ntBASIC24.23■■□□□ 1.47
Vps53Q8CCB4 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Vps53Q8CCB4 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Vps53Q8CCB4 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
Vps53Q8CCB4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Gm13042-201ENSMUST00000119244 1955 ntBASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
Vps53Q8CCB4 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Vps53Q8CCB4 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Vps53Q8CCB4 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
Vps53Q8CCB4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
Vps53Q8CCB4 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
Vps53Q8CCB4 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Vps53Q8CCB4 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
Vps53Q8CCB4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC24.16■■□□□ 1.46
Vps53Q8CCB4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Gm37415-201ENSMUST00000192265 2054 ntBASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Vps53Q8CCB4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Vps53Q8CCB4 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Vps53Q8CCB4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Vps53Q8CCB4 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Vps53Q8CCB4 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Vps53Q8CCB4 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Vps53Q8CCB4 Gm42418-201ENSMUST00000182010 1831 ntBASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Gm13241-201ENSMUST00000094493 780 ntBASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC24.12■■□□□ 1.45
Vps53Q8CCB4 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
Vps53Q8CCB4 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms