Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trub1Q8C0D0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trub1Q8C0D0 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trub1Q8C0D0 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trub1Q8C0D0 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trub1Q8C0D0 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trub1Q8C0D0 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trub1Q8C0D0 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trub1Q8C0D0 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trub1Q8C0D0 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trub1Q8C0D0 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Kdm3b-204ENSMUST00000224715 2032 ntBASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Trub1Q8C0D0 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trub1Q8C0D0 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Trub1Q8C0D0 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
Trub1Q8C0D0 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
Trub1Q8C0D0 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.58■■□□□ 1.05
Trub1Q8C0D0 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trub1Q8C0D0 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC21.58■■□□□ 1.05
Trub1Q8C0D0 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Trub1Q8C0D0 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Trub1Q8C0D0 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Trub1Q8C0D0 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trub1Q8C0D0 Gm38160-201ENSMUST00000193090 2499 ntBASIC21.56■■□□□ 1.04
Trub1Q8C0D0 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trub1Q8C0D0 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Trub1Q8C0D0 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Trub1Q8C0D0 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Trub1Q8C0D0 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Trub1Q8C0D0 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Trub1Q8C0D0 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
Trub1Q8C0D0 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 84.1 ms