Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Smarca1Q6PGB8 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
Smarca1Q6PGB8 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
Smarca1Q6PGB8 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Gm5131-201ENSMUST00000212776 1238 ntBASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
Smarca1Q6PGB8 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC23.29■■□□□ 1.32
Smarca1Q6PGB8 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Smarca1Q6PGB8 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
Smarca1Q6PGB8 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
Smarca1Q6PGB8 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
Smarca1Q6PGB8 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Etf1-202ENSMUST00000180351 108 ntBASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
Smarca1Q6PGB8 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC23.27■■□□□ 1.31
Smarca1Q6PGB8 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC23.27■■□□□ 1.31
Smarca1Q6PGB8 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Smarca1Q6PGB8 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Gm43403-201ENSMUST00000198011 1786 ntBASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Smarca1Q6PGB8 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smarca1Q6PGB8 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smarca1Q6PGB8 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smarca1Q6PGB8 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smarca1Q6PGB8 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Smarca1Q6PGB8 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.23■■□□□ 1.31
Smarca1Q6PGB8 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC23.23■■□□□ 1.31
Smarca1Q6PGB8 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC23.23■■□□□ 1.31
Smarca1Q6PGB8 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
Smarca1Q6PGB8 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Smarca1Q6PGB8 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
Smarca1Q6PGB8 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Smarca1Q6PGB8 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
Smarca1Q6PGB8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
Smarca1Q6PGB8 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
Smarca1Q6PGB8 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Gimap1-201ENSMUST00000054368 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
Smarca1Q6PGB8 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Smarca1Q6PGB8 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Smarca1Q6PGB8 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC23.18■■□□□ 1.3
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms