Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm10399-202ENSMUST00000202768 748 ntBASIC21.22■□□□□ 0.99
Six4Q61321 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.22■□□□□ 0.99
Six4Q61321 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.22■□□□□ 0.99
Six4Q61321 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Six4Q61321 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six4Q61321 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six4Q61321 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Six4Q61321 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six4Q61321 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Six4Q61321 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six4Q61321 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six4Q61321 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six4Q61321 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Six4Q61321 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
Six4Q61321 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC21.2■□□□□ 0.98
Six4Q61321 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six4Q61321 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Six4Q61321 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Six4Q61321 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Six4Q61321 Gm5131-201ENSMUST00000212776 1238 ntBASIC21.2■□□□□ 0.98
Six4Q61321 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.2■□□□□ 0.98
Six4Q61321 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six4Q61321 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Six4Q61321 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC21.19■□□□□ 0.98
Six4Q61321 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.19■□□□□ 0.98
Six4Q61321 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Six4Q61321 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Six4Q61321 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Six4Q61321 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC21.18■□□□□ 0.98
Six4Q61321 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC21.18■□□□□ 0.98
Six4Q61321 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Six4Q61321 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Six4Q61321 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.17■□□□□ 0.98
Six4Q61321 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Six4Q61321 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Six4Q61321 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Six4Q61321 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Six4Q61321 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Six4Q61321 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Six4Q61321 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC21.16■□□□□ 0.98
Six4Q61321 Gm40881-201ENSMUST00000223397 166 ntBASIC21.16■□□□□ 0.98
Six4Q61321 Gm9959-201ENSMUST00000068277 390 ntBASIC21.16■□□□□ 0.98
Six4Q61321 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Six4Q61321 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Six4Q61321 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.15■□□□□ 0.98
Six4Q61321 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Six4Q61321 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Six4Q61321 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Six4Q61321 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Six4Q61321 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Six4Q61321 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC21.14■□□□□ 0.97
Six4Q61321 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Six4Q61321 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Six4Q61321 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Six4Q61321 Gm12504-201ENSMUST00000120860 2231 ntBASIC21.13■□□□□ 0.97
Six4Q61321 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six4Q61321 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six4Q61321 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Six4Q61321 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six4Q61321 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Six4Q61321 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Six4Q61321 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.12■□□□□ 0.97
Six4Q61321 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Six4Q61321 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Six4Q61321 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
Six4Q61321 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Six4Q61321 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Six4Q61321 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC21.11■□□□□ 0.97
Six4Q61321 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Six4Q61321 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
Six4Q61321 Espn-207ENSMUST00000105653 1411 ntTSL 5 BASIC21.11■□□□□ 0.97
Six4Q61321 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Six4Q61321 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Six4Q61321 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Six4Q61321 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Six4Q61321 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Six4Q61321 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms