Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Col28a1Q2UY11 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Gm5812-201ENSMUST00000061073 957 ntBASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Col28a1Q2UY11 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.19■□□□□ 0.82
Col28a1Q2UY11 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Col28a1Q2UY11 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col28a1Q2UY11 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC20.18■□□□□ 0.82
Col28a1Q2UY11 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Col28a1Q2UY11 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Col28a1Q2UY11 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Col28a1Q2UY11 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Col28a1Q2UY11 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Col28a1Q2UY11 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Col28a1Q2UY11 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col28a1Q2UY11 Gm5921-201ENSMUST00000075898 882 ntBASIC20.14■□□□□ 0.81
Col28a1Q2UY11 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Col28a1Q2UY11 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Col28a1Q2UY11 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Col28a1Q2UY11 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Gm15039-201ENSMUST00000118914 875 ntBASIC20.11■□□□□ 0.81
Col28a1Q2UY11 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col28a1Q2UY11 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col28a1Q2UY11 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Col28a1Q2UY11 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Col28a1Q2UY11 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Col28a1Q2UY11 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 AC164883.3-201ENSMUST00000227396 1774 ntBASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Col28a1Q2UY11 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Col28a1Q2UY11 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Col28a1Q2UY11 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Col28a1Q2UY11 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC20.08■□□□□ 0.81
Col28a1Q2UY11 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Col28a1Q2UY11 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.08■□□□□ 0.8
Col28a1Q2UY11 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col28a1Q2UY11 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms