Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shox2P70390 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shox2P70390 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.79■□□□□ 0.92
Shox2P70390 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Shox2P70390 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC20.79■□□□□ 0.92
Shox2P70390 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shox2P70390 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Shox2P70390 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.78■□□□□ 0.92
Shox2P70390 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Shox2P70390 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Shox2P70390 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Shox2P70390 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC20.77■□□□□ 0.92
Shox2P70390 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.77■□□□□ 0.92
Shox2P70390 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Shox2P70390 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.91
Shox2P70390 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Shox2P70390 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.76■□□□□ 0.91
Shox2P70390 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Shox2P70390 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Shox2P70390 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
Shox2P70390 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Shox2P70390 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Shox2P70390 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Shox2P70390 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.74■□□□□ 0.91
Shox2P70390 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Shox2P70390 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Shox2P70390 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Shox2P70390 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC20.72■□□□□ 0.91
Shox2P70390 Gm4799-201ENSMUST00000095396 657 ntBASIC20.72■□□□□ 0.91
Shox2P70390 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC20.72■□□□□ 0.91
Shox2P70390 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.72■□□□□ 0.91
Shox2P70390 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.72■□□□□ 0.91
Shox2P70390 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Shox2P70390 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shox2P70390 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shox2P70390 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shox2P70390 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Shox2P70390 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Shox2P70390 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shox2P70390 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shox2P70390 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shox2P70390 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Shox2P70390 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.7■□□□□ 0.9
Shox2P70390 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Shox2P70390 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Shox2P70390 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC20.69■□□□□ 0.9
Shox2P70390 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.69■□□□□ 0.9
Shox2P70390 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Shox2P70390 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
Shox2P70390 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms