Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Chmp6P0C0A3 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Chmp6P0C0A3 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC22.67■■□□□ 1.22
Chmp6P0C0A3 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Chmp6P0C0A3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Chmp6P0C0A3 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Gm8093-201ENSMUST00000128935 1892 ntBASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Chmp6P0C0A3 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Gm18755-201ENSMUST00000218030 1099 ntBASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Chmp6P0C0A3 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Chmp6P0C0A3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Chmp6P0C0A3 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
Chmp6P0C0A3 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Chmp6P0C0A3 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC22.63■■□□□ 1.21
Chmp6P0C0A3 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Chmp6P0C0A3 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Chmp6P0C0A3 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Chmp6P0C0A3 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Gm42501-201ENSMUST00000200220 1026 ntBASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Chmp6P0C0A3 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Chmp6P0C0A3 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 AC093043.1-201ENSMUST00000226700 898 ntBASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
Chmp6P0C0A3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
Chmp6P0C0A3 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Chmp6P0C0A3 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Chmp6P0C0A3 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Chmp6P0C0A3 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Chmp6P0C0A3 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Chmp6P0C0A3 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Gm32051-202ENSMUST00000197905 2385 ntBASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Chmp6P0C0A3 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 AC158990.1-201ENSMUST00000221450 2016 ntBASIC22.55■■□□□ 1.2
Chmp6P0C0A3 AC153962.1-201ENSMUST00000218530 1948 ntBASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Chmp6P0C0A3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC22.54■■□□□ 1.2
Chmp6P0C0A3 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp6P0C0A3 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Chmp6P0C0A3 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms