Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm42853-201ENSMUST00000201273 1387 ntBASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm25214-201ENSMUST00000104573 129 ntBASIC15.04■□□□□ -0
Brf1Q8CFK2 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm8494-201ENSMUST00000178171 1233 ntBASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC15.04■□□□□ -0
Brf1Q8CFK2 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Gm6334-201ENSMUST00000207083 228 ntBASIC15.04■□□□□ -0
Brf1Q8CFK2 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
Brf1Q8CFK2 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Vwf-202ENSMUST00000112253 2184 ntTSL 1 (best) BASIC15.04■□□□□ -0
Brf1Q8CFK2 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 AC167669.2-201ENSMUST00000224417 1620 ntBASIC15.03■□□□□ -0
Brf1Q8CFK2 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm13570-201ENSMUST00000140763 309 ntBASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm42937-201ENSMUST00000197360 752 ntBASIC15.03■□□□□ -0
Brf1Q8CFK2 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm8038-201ENSMUST00000164674 2044 ntBASIC15.03■□□□□ -0
Brf1Q8CFK2 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Brf1Q8CFK2 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Brf1Q8CFK2 Gm2673-201ENSMUST00000120958 1608 ntBASIC15.03■□□□□ -0
Brf1Q8CFK2 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Brf1Q8CFK2 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm11661-201ENSMUST00000121761 1327 ntBASIC15.02■□□□□ -0
Brf1Q8CFK2 CT009757.3-201ENSMUST00000223367 2320 ntBASIC15.02■□□□□ -0
Brf1Q8CFK2 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC15.02■□□□□ -0
Brf1Q8CFK2 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC15.02■□□□□ -0
Brf1Q8CFK2 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC15.02■□□□□ -0
Brf1Q8CFK2 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.02■□□□□ -0
Brf1Q8CFK2 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC15.02■□□□□ -0
Brf1Q8CFK2 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Brf1Q8CFK2 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Brf1Q8CFK2 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Usp20-211ENSMUST00000170476 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Gm5637-201ENSMUST00000153890 1119 ntBASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Gm2991-201ENSMUST00000173338 480 ntBASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Brf1Q8CFK2 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC15.01□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms