Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Trub1Q8C0D0 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Mir1247-201ENSMUST00000116706 82 ntBASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Gm12058-201ENSMUST00000118614 437 ntBASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Gm44882-201ENSMUST00000205702 802 ntBASIC12.84□□□□□ -0.35
Trub1Q8C0D0 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Matn2-203ENSMUST00000226766 3252 ntBASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Trub1Q8C0D0 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trub1Q8C0D0 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
Trub1Q8C0D0 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trub1Q8C0D0 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
Trub1Q8C0D0 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Gm8908-201ENSMUST00000121633 1024 ntBASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 1600014C10Rik-203ENSMUST00000177983 403 ntTSL 2 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 AC140406.1-201ENSMUST00000226481 465 ntBASIC12.83□□□□□ -0.36
Trub1Q8C0D0 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Bdp1-201ENSMUST00000038104 9921 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Rps6kb1-207ENSMUST00000154617 5531 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Gm37737-201ENSMUST00000195013 1638 ntBASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
Trub1Q8C0D0 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.82□□□□□ -0.36
Trub1Q8C0D0 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC12.82□□□□□ -0.36
Trub1Q8C0D0 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC12.82□□□□□ -0.36
Trub1Q8C0D0 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms