Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 AC154532.1-201ENSMUST00000227860 965 ntBASIC13.79□□□□□ -0.2
Col6a1Q04857 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.79□□□□□ -0.2
Col6a1Q04857 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Sirpa-214ENSMUST00000179001 3812 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
Col6a1Q04857 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col6a1Q04857 Gdf6-201ENSMUST00000057613 3532 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Emp1-206ENSMUST00000205156 2911 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 AC122314.1-201ENSMUST00000223056 2239 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm15515-201ENSMUST00000117827 822 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm6506-201ENSMUST00000119775 1136 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm6039-201ENSMUST00000121667 1250 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Itpr3os-201ENSMUST00000143605 794 ntTSL 2 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 AY036118-201ENSMUST00000200021 923 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm19187-201ENSMUST00000206781 892 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC13.78□□□□□ -0.2
Col6a1Q04857 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col6a1Q04857 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Gm38355-201ENSMUST00000192514 1570 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.78□□□□□ -0.2
Col6a1Q04857 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col6a1Q04857 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Col6a1Q04857 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm12798-201ENSMUST00000124786 666 ntTSL 5 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm10051-201ENSMUST00000145209 414 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC13.77□□□□□ -0.21
Col6a1Q04857 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Rnf14-202ENSMUST00000170811 2886 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm8018-201ENSMUST00000173536 789 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm29155-201ENSMUST00000185910 269 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC13.77□□□□□ -0.21
Col6a1Q04857 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Cthrc1-201ENSMUST00000067072 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms