Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC12.91□□□□□ -0.34
Sox9Q04887 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Gm9996-201ENSMUST00000070359 913 ntBASIC12.91□□□□□ -0.34
Sox9Q04887 Mir483-201ENSMUST00000093631 73 ntBASIC12.91□□□□□ -0.34
Sox9Q04887 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Sox9Q04887 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
Sox9Q04887 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Sox9Q04887 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
Sox9Q04887 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Sox9Q04887 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Sox9Q04887 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Szrd1-203ENSMUST00000102487 3244 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC12.9□□□□□ -0.34
Sox9Q04887 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm13668-201ENSMUST00000119237 1001 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm12948-201ENSMUST00000119406 682 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm11980-201ENSMUST00000121445 986 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 Gm22144-201ENSMUST00000157402 102 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC12.9□□□□□ -0.34
Sox9Q04887 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC12.9□□□□□ -0.34
Sox9Q04887 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Mir6923-201ENSMUST00000184592 72 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 1700088E04Rik-203ENSMUST00000186053 535 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Gm43184-201ENSMUST00000197247 542 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 AC140375.1-201ENSMUST00000225421 694 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Tff2-201ENSMUST00000024826 584 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Gm25201-201ENSMUST00000083093 170 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm10288-201ENSMUST00000084614 537 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Gm43134-201ENSMUST00000199434 1886 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Sox9Q04887 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.9□□□□□ -0.34
Sox9Q04887 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
Sox9Q04887 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sox9Q04887 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sox9Q04887 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Sox9Q04887 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
Sox9Q04887 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
Sox9Q04887 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Sox9Q04887 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC12.89□□□□□ -0.35
Sox9Q04887 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
Sox9Q04887 Gm5989-201ENSMUST00000096092 2077 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Mir1956-201ENSMUST00000157748 65 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC12.89□□□□□ -0.35
Sox9Q04887 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Ighv1-48-201ENSMUST00000191795 294 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Cd1d2-202ENSMUST00000192481 1131 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Gm9111-201ENSMUST00000219394 709 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Cinp-204ENSMUST00000221102 536 ntTSL 2 BASIC12.89□□□□□ -0.35
Sox9Q04887 AC129219.2-201ENSMUST00000224324 701 ntBASIC12.89□□□□□ -0.35
Sox9Q04887 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sox9Q04887 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 65.1 ms