Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 AI314180-202ENSMUST00000102889 7045 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Tenm3-206ENSMUST00000190840 8663 ntAPPRIS ALT1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx1P18111 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm15678-201ENSMUST00000117573 960 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Mir7654-201ENSMUST00000185082 70 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Cdx1P18111 Rnf2-203ENSMUST00000186415 1106 ntTSL 5 BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm35960-201ENSMUST00000202712 767 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 CT030657.3-201ENSMUST00000222707 1200 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC10.13□□□□□ -0.79
Cdx1P18111 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Chst4-202ENSMUST00000211894 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 C130080G10Rik-203ENSMUST00000154140 1564 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Gm43522-201ENSMUST00000196697 1922 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 AC156031.2-201ENSMUST00000213107 3310 ntBASIC10.13□□□□□ -0.79
Cdx1P18111 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Nrg1-202ENSMUST00000207417 3138 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Cdx1P18111 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
Cdx1P18111 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
Cdx1P18111 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Ndc1-204ENSMUST00000139560 4584 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Rai1-203ENSMUST00000102688 6921 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC10.12□□□□□ -0.79
Cdx1P18111 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Angpt4-201ENSMUST00000028955 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Cdx1P18111 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Tmed9-203ENSMUST00000224741 1450 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Gm15271-201ENSMUST00000134627 2110 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Slc35g3-201ENSMUST00000102586 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 A730071L15Rik-201ENSMUST00000181545 1615 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Cdx1P18111 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Ephx3-201ENSMUST00000087721 2416 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC10.12□□□□□ -0.79
Cdx1P18111 Gm16122-201ENSMUST00000142625 1158 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC10.12□□□□□ -0.79
Cdx1P18111 Stk19-ps1-201ENSMUST00000174597 517 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC10.12□□□□□ -0.79
Cdx1P18111 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Gm18307-201ENSMUST00000206864 949 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Gm17795-201ENSMUST00000214505 757 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 AC155258.1-201ENSMUST00000219303 253 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Gm17794-201ENSMUST00000220252 955 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 AC155252.1-201ENSMUST00000226462 1208 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 AC150560.1-201ENSMUST00000227731 1187 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 AC159195.3-201ENSMUST00000225162 2211 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Gm8131-201ENSMUST00000213783 1570 ntBASIC10.12□□□□□ -0.79
Cdx1P18111 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
Cdx1P18111 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Cdx1P18111 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC10.12□□□□□ -0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms