Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC14.75□□□□□ -0.05
Col3a1P08121 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Col3a1P08121 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Gm12165-201ENSMUST00000117047 342 ntBASIC14.75□□□□□ -0.05
Col3a1P08121 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
Col3a1P08121 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Gm44126-201ENSMUST00000204831 514 ntBASIC14.75□□□□□ -0.05
Col3a1P08121 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC14.75□□□□□ -0.05
Col3a1P08121 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC14.75□□□□□ -0.05
Col3a1P08121 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col3a1P08121 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC14.74□□□□□ -0.05
Col3a1P08121 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Gm43081-201ENSMUST00000199082 1380 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC14.74□□□□□ -0.05
Col3a1P08121 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Gm12857-201ENSMUST00000117678 592 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 Gm15595-201ENSMUST00000120840 961 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.74□□□□□ -0.05
Col3a1P08121 Gm8285-201ENSMUST00000208293 759 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC14.74□□□□□ -0.05
Col3a1P08121 D9Wsu149-201ENSMUST00000214169 594 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 AC125486.1-201ENSMUST00000218701 320 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Gm37437-201ENSMUST00000194451 1937 ntBASIC14.74□□□□□ -0.05
Col3a1P08121 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col3a1P08121 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Cd34-202ENSMUST00000110815 2554 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col3a1P08121 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col3a1P08121 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC14.73□□□□□ -0.05
Col3a1P08121 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Col3a1P08121 Gm8100-201ENSMUST00000182906 988 ntBASIC14.73□□□□□ -0.05
Col3a1P08121 Mir6546-201ENSMUST00000184460 62 ntBASIC14.73□□□□□ -0.05
Col3a1P08121 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC14.73□□□□□ -0.05
Col3a1P08121 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.73□□□□□ -0.05
Col3a1P08121 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col3a1P08121 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Gm43570-201ENSMUST00000199951 3688 ntBASIC14.73□□□□□ -0.05
Col3a1P08121 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Col3a1P08121 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col3a1P08121 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gm10152-201ENSMUST00000193475 1344 ntBASIC14.72□□□□□ -0.05
Col3a1P08121 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC14.72□□□□□ -0.05
Col3a1P08121 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col3a1P08121 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.72□□□□□ -0.05
Col3a1P08121 AC159819.2-201ENSMUST00000216151 342 ntBASIC14.72□□□□□ -0.05
Col3a1P08121 Ginm1-202ENSMUST00000065124 300 ntBASIC14.72□□□□□ -0.05
Col3a1P08121 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 77.2 ms