Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-225ENSMUST00000179658 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Gm37207-201ENSMUST00000194284 296 ntBASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Tnnt3-202ENSMUST00000078497 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Scn4aQ9ER60 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Scn4aQ9ER60 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Copz1-201ENSMUST00000100162 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Gm14052-201ENSMUST00000121434 1031 ntBASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Selenbp2-204ENSMUST00000173849 1323 ntTSL 5 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Scn4aQ9ER60 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Micu1-204ENSMUST00000165563 2442 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm17221-201ENSMUST00000163909 481 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm17073-201ENSMUST00000168069 556 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm9034-201ENSMUST00000182071 1005 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm19046-201ENSMUST00000221263 1298 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Capsl-202ENSMUST00000226688 739 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm10729-202ENSMUST00000193403 1375 ntBASIC16.57■□□□□ 0.24
Scn4aQ9ER60 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Scn4aQ9ER60 Blvra-202ENSMUST00000110389 657 ntTSL 3 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm12129-201ENSMUST00000120104 1147 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 H2afb3-201ENSMUST00000122050 348 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm38233-201ENSMUST00000194259 807 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 AC118639.2-201ENSMUST00000226289 223 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Tmsb15b2-201ENSMUST00000069803 450 ntTSL 2 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Lin54-208ENSMUST00000149714 3869 ntTSL 5 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Dppa3-ps-201ENSMUST00000116499 451 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm14320-201ENSMUST00000137275 1023 ntTSL 3 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm27003-201ENSMUST00000182590 497 ntTSL 5 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 AC164099.1-201ENSMUST00000227780 333 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 n-R5s71-201ENSMUST00000093668 119 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Olfr669-201ENSMUST00000098164 954 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 AC093022.4-203ENSMUST00000228523 2657 ntBASIC16.56■□□□□ 0.24
Scn4aQ9ER60 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Scn4aQ9ER60 AC122314.1-201ENSMUST00000223056 2239 ntBASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Mob1b-201ENSMUST00000006424 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Scn4aQ9ER60 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC16.55■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms