Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gm37008-201ENSMUST00000195712 319 ntBASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gm42929-201ENSMUST00000198374 1286 ntBASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Gm7172-201ENSMUST00000218047 1152 ntBASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sh3rf1Q69ZI1 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Gm5780-201ENSMUST00000217774 1834 ntBASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 AC122860.2-201ENSMUST00000217967 2671 ntBASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.71□□□□□ -0.38
Sh3rf1Q69ZI1 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm10040-201ENSMUST00000080726 1662 ntBASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm12945-201ENSMUST00000140080 674 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Armc2-208ENSMUST00000162405 1135 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm38002-201ENSMUST00000193255 180 ntBASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Myl10-202ENSMUST00000196068 911 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 AC140406.1-201ENSMUST00000226481 465 ntBASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Npr2-202ENSMUST00000107874 3480 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Ocln-203ENSMUST00000159459 1950 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gm5053-201ENSMUST00000208361 1678 ntBASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC12.7□□□□□ -0.38
Sh3rf1Q69ZI1 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Dis3l-208ENSMUST00000168844 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Mir686-201ENSMUST00000102174 109 ntBASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Gm14723-201ENSMUST00000118686 215 ntBASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Sh3rf1Q69ZI1 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.69□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms